DGE between responders in PBMC
Results
All cells
single cell
sample level
## Warning: Removed 5119 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 459 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
major cell type level
## Warning: Removed 5133 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 451 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5708 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 185 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
cell subtype level
## Warning: Removed 4704 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 384 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5708 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 185 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5530 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 432 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5064 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 307 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5866 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 1620 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5772 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 110 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5273 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 370 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5652 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 191 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 4919 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 3 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 9444 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 8190 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 5023 rows containing missing values (`geom_text_repel()`).
Pseudobulk
sample level
## Warning: Removed 89 rows containing missing values (`geom_point()`).## Warning: Removed 10515 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 30 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
major cell type level
## Warning: Removed 85 rows containing missing values (`geom_point()`).## Warning: Removed 10514 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 29 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5511 rows containing missing values (`geom_point()`).## Warning: Removed 10504 rows containing missing values (`geom_text_repel()`).
cell subtype level
## Warning: Removed 8 rows containing missing values (`geom_point()`).## Warning: Removed 10523 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 5 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 9647 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 843 rows containing missing values (`geom_point()`).## Warning: Removed 10531 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 9 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6545 rows containing missing values (`geom_point()`).## Warning: Removed 10539 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 13 rows containing missing values (`geom_point()`).## Warning: Removed 10532 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 1 rows containing missing values (`geom_point()`).## Warning: Removed 10454 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 123 rows containing missing values (`geom_point()`).## Warning: Removed 10541 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 1 rows containing missing values (`geom_point()`).## Warning: Removed 10507 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 7797 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 626 rows containing missing values (`geom_point()`).## Warning: Removed 10514 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 14 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5511 rows containing missing values (`geom_point()`).## Warning: Removed 10504 rows containing missing values (`geom_text_repel()`).
CAR+ cells
single cell
sample level
## Warning: Removed 6002 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 550 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
major cell type level
## Warning: Removed 5988 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 555 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6503 rows containing missing values (`geom_text_repel()`).
cell subtype level
## Warning: Removed 5376 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 501 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5951 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 156 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6378 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 6165 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 225 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6123 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 72 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6209 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 9001 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 5354 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 174 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6503 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 6633 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 2108 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5571 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 5571 rows containing missing values (`geom_text_repel()`).
Pseudobulk
sample level
## Warning: Removed 87 rows containing missing values (`geom_point()`).## Warning: Removed 9148 rows containing missing values (`geom_text_repel()`).
major cell type level
## Warning: Removed 85 rows containing missing values (`geom_point()`).## Warning: Removed 9148 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 8870 rows containing missing values (`geom_text_repel()`).
cell subtype level
## Warning: Removed 5 rows containing missing values (`geom_point()`).## Warning: Removed 9126 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 7942 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 9 rows containing missing values (`geom_point()`).## Warning: Removed 9149 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 5 rows containing missing values (`geom_point()`).## Warning: Removed 9102 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 15 rows containing missing values (`geom_point()`).## Warning: Removed 9149 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 9010 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 9141 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 1 rows containing missing values (`geom_point()`).## Warning: Removed 9090 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 9 rows containing missing values (`geom_point()`).## Warning: Removed 9147 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 8870 rows containing missing values (`geom_text_repel()`).